- In-silico Interaction Studies Of Marine Organisms Metabolites With Drug Target SIRT1 Of Diabetic Kidney Disease
-
Chakresh Kumar Jain
2021 ; 2021(1):
- 논문분류 :
- 춘계학술대회 초록집
Objective: downlaoded the strcutrue of drug target Sirtuin-1 (SIRT1) (PDB ID: 5BTR.pdb) from www.rcsb.org peptide sequence GFFALIPGIE of Pardaxin 1 released by red sea fish Pardachirus marmoratus and Pardachirus pavoninus to repel the sharks , has been downloaded from uniprot (https://www.uniprot.org/uniprot/P81863) The known antidiabetic peptide (LLPLPVLK) from soya protein has been taken as positive control The computational interaction ( blind docking has been performed through online tool HPEPDOCK server ( http://huanglab.phys.hust.edu.cn/hpepdock/.) Methods: The docking score : -185.66 of drug target -marine paptide Pardaxin 1 where as control ( soya peptide) docking score was -155.096 obtained from HPEPDOCK server which reflect that marine organisms anticancer peptide has better inerection /docking as compare to control ( soya protien) Results: The peptide pardaxin 1 ( anticancer peptide) produced in red sea sole which is a alpha-helical cationic peptide with , helix-hinge-helix structure has shown considerably better docking score (-185.66 ) then soya protein on computational platform and shown its dual role. Hence can be a potential lead for wet lab experimentation for further validations Conclusions: Objective: Diabetic Kidney Disease or Diabetic nephropathy (DN) is very common, poorly prognosed and found approx. 20–40% in diabetic persons and one of the cause behind kidney failure leading the mortality Natural products like peptides often have lower side effect, less immunogenic and more stable as compare to chemical drug molecules used in the treatment. we are investigating the potential use of natural anti cancer peptide (GFFALIPGIE) of Pardaxin 1 obtained from red sea fish P. marmoratas and P. pavoninus and its dual role as antidiabtic peptide in diabetic kidney diseases against sirtuin-1 (SIRT1) (PDB ID: 5BTR.pdb), a potential drug target for diabetic kidney disease objective is to explore the potential use of anticancer and antimicrobial natural peptides derieved from marine organisms towards diabetic kidney diseases through in-silico interection study Methods: downlaoded the strcutrue of drug target Sirtuin-1 (SIRT1) (PDB ID: 5BTR.pdb) from www.rcsb.org peptide sequence GFFALIPGIE of Pardaxin 1 released by red sea fish Pardachirus marmoratus and Pardachirus pavoninus to repel the sharks , has been downloaded from uniprot (https://www.uniprot.org/uniprot/P81863) The known antidiabetic peptide (LLPLPVLK) from soya protein has been taken as positive control The computational interaction ( blind docking has been performed through online tool HPEPDOCK server ( http://huanglab.phys.hust.edu.cn/hpepdock/.) Results: The docking score : -185.66 of drug target -marine paptide Pardaxin 1 where as control ( soya peptide) docking score was -155.096 obtained from HPEPDOCK server which reflect that marine organisms anticancer peptide has better inerection /docking as compare to control ( soya protien) Conclusions: The peptide pardaxin 1 ( anticancer peptide) produced in red sea sole which is a alpha-helical cationic peptide with , helix-hinge-helix structure has shown considerably better docking score (-185.66 ) then soya protein on computational platform and shown its dual role. Hence can be a potential lead for wet lab experimentation for further validations